PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000491198
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 82aa    MW: 9657.85 Da    PI: 9.1404
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000491198genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2224.3e-071638123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C++C++ F r  nL+ H r+H
  MDP0000491198 16 YVCEICNQGFQRDQNLQMHRRRH 38
                   9*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-61538IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.18E-61638No hitNo description
PROSITE profilePS5015710.971638IPR007087Zinc finger, C2H2
SMARTSM003550.00521638IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MQKWCLCPPI PYSDRYVCEI CNQGFQRDQN LQMHRRRHKV LWKLLKQEIA EDQVIKKKVF  60
VCPEHSCLHX XPATPSVISS R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.127701e-76bud| fruit| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009342740.16e-33PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103934714
SwissprotQ9C9X72e-26IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLD9ZIS61e-31D9ZIS6_MALDO; C2H2L domain class transcription factor
STRINGGLYMA05G26780.23e-25(Glycine max)
STRINGGLYMA08G09760.13e-25(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-27indeterminate(ID)-domain 14